High Protein Breakfast Cottage Cheese Muffins

An icon representing a clock 35 min | easy | gluten-free, keto-friendly, Mediterranean diet
Review

Introduction

These high protein cottage cheese muffins are fluffy, cheesy, and legit satisfying, with eggs, cottage cheese, cream cheese, cheddar, scallions, bell pepper, garlic, and a proper hit of salt and pepper so they actually taste like breakfast.

Think crustless quiche meets egg bites, perfect for meal prep and grab-and-go mornings, brunch spreads, or post-workout fuel, and they reheat like a charm.

Ingredients  (10 servings)

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Ingredients:

  • 6 large eggs
  • 1 cup whole-milk cottage cheese
  • 2 oz cream cheese, softened
  • ½ cup shredded cheddar cheese
  • 2 Tbsp red bell peppers, finely diced
  • ¼ cup green onions, chopped
  • ½ tsp garlic powder
  • ¼ tsp salt
  • ¼ tsp freshly ground black pepper
  • cooking oil spray (for greasing muffin tin)
High Protein Breakfast Cottage Cheese Muffins

How to Make High Protein Breakfast Cottage Cheese Muffins

  1. Preheat and prep the tin

    Heat the oven to 350 F and set a rack in the center.

    Generously spray a standard 12-cup muffin tin with cooking spray, hitting the rims and edges so nothing dares to stick.

  2. Drain the cottage cheese

    Set the cottage cheese in a fine mesh strainer for 5 minutes to shed excess liquid so your muffins bake lofty, not watery.

  3. Blend the base

    In a blender or with a strong whisk, blend the eggs, drained cottage cheese, and softened cream cheese until smooth and lightly frothy.

    Add the garlic powder, salt, and black pepper and blend for 5 seconds to season evenly.

  4. Fold in the mix-ins

    Stir in the shredded cheddar, finely diced red bell pepper, and chopped scallions with a spatula so the solids are evenly dispersed and do not sink.

  5. Fill the cups

    Divide the mixture into 10 of the muffin cups, filling each about 3/4 full so they have room to puff.

    If any cups are empty, add a few tablespoons of water to those to promote even baking.

  6. Bake

    Bake for 18 to 22 minutes until the muffins are puffed, lightly golden at the edges, and the centers are just set with a slight jiggle.

    If you check with a thermometer, you are aiming for about 165 F in the center.

  7. Rest and release

    Cool in the pan for 5 minutes to let the proteins set so they come out cleanly.

    Run a thin offset spatula or butter knife around each muffin and lift them out like a pro.

  8. Serve, store, and reheat

    Serve hot or warm with a crack of pepper or a dab of hot sauce if you like a little attitude with breakfast.

    Refrigerate leftovers in a covered glass container for up to 4 days or freeze up to 2 months, then reheat at 300 F for 8 to 10 minutes or microwave at 50 percent power until warm.

High Protein Breakfast Cottage Cheese Muffins

Substitutions

Cottage cheese -> whole-milk ricotta
Ricotta gives a silkier, custard-like bite with gentle sweetness while staying high protein, and it reduces tang if cottage cheese is not your thing.
Cream cheese -> soft goat cheese
Goat cheese adds a bright, tangy backbone and whips in ultra smooth, making the muffins taste richer without feeling heavy.
Cheddar -> pepper jack
Pepper jack melts creamy like cheddar but brings a soft chili heat and a little attitude, which plays nicely with scallions and garlic.
High Protein Breakfast Cottage Cheese Muffins

Tips

Season like you mean it
Eggs are bland by nature, so do not skimp on salt and pepper, and if you love big flavor, add a pinch of smoked paprika or a teaspoon of sofrito to the blend.
Blend for fluff
Whizzing the eggs with the cheeses introduces micro-bubbles that help these rise and set tender instead of baking up dense.
Keep moisture in check
Draining the cottage cheese and finely dicing the pepper keep excess water out, which prevents soggy bottoms and collapse.
Grease with intention
Hit every surface of the muffin tin, especially the top rim where egg likes to cling, so release is smooth and your muffins do not tear.
Do not overbake
Pull them when centers still have a slight jiggle because carryover heat finishes the set and keeps the texture custardy rather than rubbery.
Finish with a topper
A sprinkle of everything bagel seasoning or extra cheddar on top in the last 5 minutes adds crunch and a bakery vibe.
Batch and freeze smart
Freeze on a sheet tray, then move to a bag so they do not stick together and you can grab exactly what you need on a busy morning.

Nutrition Facts *

Energy 103 kcal
Protein 8 g
Total Fat 7 g
Carbohydrates 2 g
Dietary Fiber 0 g

* Approximate, per serving.
Data source: USDA FoodData Central.

FAQ

Why did my muffins sink after baking?
They were likely underbaked or too wet, so bake until just set with light browning at the edges and make sure to drain cottage cheese and dice peppers finely.
How do I keep them from sticking to the pan?
Use a well-seasoned metal tin, coat with cooking spray generously, and let them rest 5 minutes before running a thin spatula around the edges to release.
Can I use silicone liners?
Yes, but they can trap steam and soften the edges, so cool a bit longer and pop them out onto a rack so the sides do not get soggy.
My muffins came out watery, what went wrong?
Excess moisture from the cottage cheese or peppers causes that, so drain the cottage cheese, avoid overloading with veggies, and bake on the center rack for steady heat.
How can I add more protein without changing texture?
Whisk in 1 tablespoon of unflavored whey isolate or collagen peptides, which dissolve cleanly and keep the custard tender.
Can I double the recipe?
Yes, bake on two racks and rotate the pans halfway through, and watch the timing because a fuller oven can add a couple minutes.

Serving Suggestions

Brunch it up with sliced avocado, a drizzle of hot honey, and a peppery arugula side, or go full New York and crown them with a smear of scallion cream cheese and everything seasoning.

If you want a bolder variation, fold in a spoon of chopped pickled jalapenos or diced crisped turkey bacon before baking for heat and smoky pops without losing that plush, high-protein bite.

More pairings:

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